Only half of the surveyed area uploaded

2nd fight which flew well and recorded 93 images when on site. No internet so i used the SD card onto PC. when downloading there were in fact 128 images which looked to be correct (i was aiming for a church ruins which i could see in the photos). When uploaded i am only seeing images from and area i thought i had discounted from the mission and the church i was hoping to cover has been missed.
I have tried to upload twice but without success