4km, coordinates systems are same. Shape file is using WGS1984 UTM Zone 44N and the drone deploy generated raster is having WGS1984 Pseudo Mercator.
What I did was I converted the shape file to KML and then upload to drone deploy and did the mapping and upload to drone deploy and generated the raster.
I will try to create a KML using google earth and do a trail for some other area. Because the area what I was mapped is far away and difficult to re do the mission.